CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1161 rna-evm.model.Chr11.1161 Chr11 46987231 47052554 PREDICTED: Vacuolar protein sorting-associated protein 13B nan K19526
gene-evm.TU.Chr11.1162 rna-evm.model.Chr11.1162 Chr11 47065995 47067308 PREDICTED: FMRFamide receptor GO:0004930;GO:0007186;GO:0016020 K08428
gene-evm.TU.Chr11.1163 rna-evm.model.Chr11.1163 Chr11 47094080 47094739 PREDICTED: Lysophosphatidic acid receptor 6 GO:0004930;GO:0007186;GO:0016020 K04176
gene-evm.TU.Chr11.1164 rna-evm.model.Chr11.1164 Chr11 47106833 47108470 PREDICTED: FMRFamide receptor GO:0004930;GO:0007186;GO:0016020 K08428
gene-evm.TU.Chr11.1165 rna-evm.model.Chr11.1165 Chr11 47125264 47131155 PREDICTED: Perilipin-2 nan K17284
gene-evm.TU.Chr11.1166 rna-evm.model.Chr11.1166 Chr11 47140282 47151565 uncharacterized protein nan nan
gene-evm.TU.Chr11.1167 rna-evm.model.Chr11.1167 Chr11 47153646 47169044 PREDICTED: Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase GO:0005737;GO:0006516 K01456
gene-evm.TU.Chr11.1168 rna-evm.model.Chr11.1168 Chr11 47180280 47200264 PREDICTED: Ubiquitin-conjugating enzyme E2 Q2 nan K10582
gene-evm.TU.Chr11.1169 rna-evm.model.Chr11.1169 Chr11 47246363 47247709 PREDICTED: hemicentin nan nan
gene-evm.TU.Chr11.1170 rna-evm.model.Chr11.1170 Chr11 47247755 47249313 PREDICTED: THAP domain-containing protein 11 GO:0003676 K23211

For more detailed data, you can explore the Download section to access the full dataset.