CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1151 rna-evm.model.Chr11.1151 Chr11 46778665 46779810 PREDICTED: FMRFamide receptor GO:0004930;GO:0007186;GO:0016020 K04176
gene-evm.TU.Chr11.1152 rna-evm.model.Chr11.1152 Chr11 46795906 46796985 PREDICTED: G-protein coupled receptor daf-37 GO:0004930;GO:0007186;GO:0016020 K08428
gene-evm.TU.Chr11.1153 rna-evm.model.Chr11.1153 Chr11 46810862 46811814 uncharacterized protein nan K11578
gene-evm.TU.Chr11.1154 rna-evm.model.Chr11.1154 Chr11 46811841 46814696 uncharacterized protein nan K13187
gene-evm.TU.Chr11.1155 rna-evm.model.Chr11.1155 Chr11 46814754 46815608 PREDICTED: gamma-tubulin complex component 6 nan K08530
gene-evm.TU.Chr11.1156 rna-evm.model.Chr11.1156 Chr11 46815702 46816673 PREDICTED: Integrase/recombinase xerD homolog GO:0003677;GO:0006310;GO:0015074 K04763
gene-evm.TU.Chr11.1157 rna-evm.model.Chr11.1157 Chr11 46857378 46859136 PREDICTED: FMRFamide receptor GO:0004930;GO:0007186;GO:0016020 K08428
gene-evm.TU.Chr11.1158 rna-evm.model.Chr11.1158.2 Chr11 46919548 46961916 PREDICTED: Endophilin-A2 GO:0005515;GO:0005737 K11247
gene-evm.TU.Chr11.116 rna-evm.model.Chr11.116.1 Chr11 5251714 5320960 PREDICTED: Kin of IRRE-like protein 1 nan K06754
gene-evm.TU.Chr11.1160 rna-evm.model.Chr11.1160 Chr11 46978562 46983051 PREDICTED: Sperm-associated antigen 8 GO:0008017 nan

For more detailed data, you can explore the Download section to access the full dataset.