CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1140 rna-evm.model.Chr11.1140 Chr11 46366362 46372515 PREDICTED: 60S ribosomal protein L17 GO:0003735;GO:0005840;GO:0006412;GO:0015934 K02880
gene-evm.TU.Chr11.1141 rna-evm.model.Chr11.1141 Chr11 46375984 46401240 PREDICTED: OTU domain-containing protein 7B GO:0003677;GO:0008270 K11860
gene-evm.TU.Chr11.1142 rna-evm.model.Chr11.1142 Chr11 46411882 46425388 PREDICTED: E3 ubiquitin-protein ligase COP1 nan K10143
gene-evm.TU.Chr11.1143 rna-evm.model.Chr11.1143 Chr11 46430579 46431715 PREDICTED: Probable G-protein coupled receptor B0563.6 GO:0004930;GO:0007186;GO:0016020 K04284
gene-evm.TU.Chr11.1144 rna-evm.model.Chr11.1144 Chr11 46480420 46485234 uncharacterized protein GO:0008289 K08756
gene-evm.TU.Chr11.1145 rna-evm.model.Chr11.1145 Chr11 46527540 46528145 uncharacterized protein nan K04144
gene-evm.TU.Chr11.1147 rna-evm.model.Chr11.1147 Chr11 46544708 46554253 PREDICTED: D(1)-like dopamine receptor GO:0004930;GO:0007186;GO:0016020 K04142
gene-evm.TU.Chr11.1149 rna-evm.model.Chr11.1149 Chr11 46705480 46707363 PREDICTED: Zinc finger protein 324A GO:0003676 K09191
gene-evm.TU.Chr11.115 rna-evm.model.Chr11.115 Chr11 5233481 5236780 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr11.1150 rna-evm.model.Chr11.1150 Chr11 46709292 46737256 uncharacterized protein nan K24346

For more detailed data, you can explore the Download section to access the full dataset.