CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1127 rna-evm.model.Chr11.1127 Chr11 45289006 45289587 uncharacterized protein nan K22804
gene-evm.TU.Chr11.1128 rna-evm.model.Chr11.1128 Chr11 45565193 45571613 PREDICTED: Zinc finger BED domain-containing protein 1 GO:0046983 K24637
gene-evm.TU.Chr11.1129 rna-evm.model.Chr11.1129 Chr11 45571580 45580178 PREDICTED: limbic system-associated membrane protein nan K16690
gene-evm.TU.Chr11.1130 rna-evm.model.Chr11.1130 Chr11 45582996 45604961 uncharacterized protein nan K06774
gene-evm.TU.Chr11.1133 rna-evm.model.Chr11.1133 Chr11 46027926 46028522 PREDICTED: CD109 antigen nan nan
gene-evm.TU.Chr11.1136 rna-evm.model.Chr11.1136 Chr11 46205795 46211494 PREDICTED: Vesicle transport protein USE1 nan K08507
gene-evm.TU.Chr11.1137 rna-evm.model.Chr11.1137 Chr11 46218236 46254776 PREDICTED: Testis-expressed protein 45 nan nan
gene-evm.TU.Chr11.1138 rna-evm.model.Chr11.1138 Chr11 46278296 46306678 PREDICTED: Chondroitin sulfate synthase 1 GO:0008376;GO:0032580 K13499
gene-evm.TU.Chr11.1139 rna-evm.model.Chr11.1139 Chr11 46312845 46361816 PREDICTED: Regulation of nuclear pre-mRNA domain-containing protein 2 nan K15559
gene-evm.TU.Chr11.114 rna-evm.model.Chr11.114 Chr11 5229452 5233956 uncharacterized protein nan K17383

For more detailed data, you can explore the Download section to access the full dataset.