CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1116 rna-evm.model.Chr11.1116 Chr11 44667393 44698126 PREDICTED: Pregnancy zone protein GO:0004866;GO:0005615 K23593
gene-evm.TU.Chr11.1117 rna-evm.model.Chr11.1117 Chr11 44698553 44709997 PREDICTED: Pregnancy zone protein GO:0005576;GO:0005615 K23593
gene-evm.TU.Chr11.1118 rna-evm.model.Chr11.1118 Chr11 44722013 44724023 PREDICTED: Uncharacterized monothiol glutaredoxin F10D7.3 GO:0009055;GO:0015035;GO:0045454 K03676
gene-evm.TU.Chr11.1119 rna-evm.model.Chr11.1119 Chr11 44725087 44733811 PREDICTED: Perilipin-2 nan K17284
gene-evm.TU.Chr11.1120 rna-evm.model.Chr11.1120 Chr11 44746704 44767440 PREDICTED: FK506-binding protein 4 GO:0003755 K14826
gene-evm.TU.Chr11.1121 rna-evm.model.Chr11.1121 Chr11 44823903 44869070 PREDICTED: Semaphorin-2A GO:0005515;GO:0030215 K06842
gene-evm.TU.Chr11.1122 rna-evm.model.Chr11.1122 Chr11 44879899 44888051 uncharacterized protein nan K23162
gene-evm.TU.Chr11.1123 rna-evm.model.Chr11.1123 Chr11 44908487 44911797 PREDICTED: Krueppel-like factor 9 GO:0003676 K09208
gene-evm.TU.Chr11.1124 rna-evm.model.Chr11.1124 Chr11 44916620 44928476 PREDICTED: 28S ribosomal protein S11, mitochondrial GO:0003735;GO:0005840;GO:0006412 K02948
gene-evm.TU.Chr11.1126 rna-evm.model.Chr11.1126 Chr11 45072174 45072955 PREDICTED: histone-lysine N-methyltransferase SETMAR [EC:2.1.1.43] nan nan

For more detailed data, you can explore the Download section to access the full dataset.