CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1103 rna-evm.model.Chr11.1103 Chr11 43866649 43884213 uncharacterized protein nan K06774
gene-evm.TU.Chr11.1104 rna-evm.model.Chr11.1104 Chr11 43887671 43907320 PREDICTED: limbic system-associated membrane protein nan K16690
gene-evm.TU.Chr11.1106 rna-evm.model.Chr11.1106 Chr11 44319325 44322238 PREDICTED: BTB/POZ domain-containing protein KCTD1/15 nan K21754
gene-evm.TU.Chr11.1108 rna-evm.model.Chr11.1108 Chr11 44355148 44355909 uncharacterized protein nan K10804
gene-evm.TU.Chr11.111 rna-evm.model.Chr11.111 Chr11 5085260 5085627 PREDICTED: Leucine-rich repeat and coiled-coil domain-containing protein PF07_0014 nan K20394
gene-evm.TU.Chr11.1110 rna-evm.model.Chr11.1110 Chr11 44357705 44359792 PREDICTED: ATP-dependent DNA helicase PIF1 GO:0000723;GO:0003678;GO:0006281 K15255
gene-evm.TU.Chr11.1112 rna-evm.model.Chr11.1112 Chr11 44463081 44476034 PREDICTED: Hillarin nan K24456
gene-evm.TU.Chr11.1113 rna-evm.model.Chr11.1113 Chr11 44478154 44567291 PREDICTED: Alpha-1-macroglobulin GO:0004866 K23593
gene-evm.TU.Chr11.1114 rna-evm.model.Chr11.1114 Chr11 44567774 44576773 PREDICTED: Pregnancy zone protein GO:0005615 K23593
gene-evm.TU.Chr11.1115 rna-evm.model.Chr11.1115 Chr11 44577983 44659328 PREDICTED: Ovostatin GO:0005576 K23593

For more detailed data, you can explore the Download section to access the full dataset.