CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1088 rna-evm.model.Chr11.1088 Chr11 42434499 42439652 PREDICTED: Alkaline phosphatase, tissue-nonspecific isozyme GO:0016791 K01077
gene-evm.TU.Chr11.1089 rna-evm.model.Chr11.1089 Chr11 42450723 42450880 uncharacterized protein nan nan
gene-evm.TU.Chr11.109 rna-evm.model.Chr11.109 Chr11 4755286 4799956 PREDICTED: Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 nan K13646
gene-evm.TU.Chr11.1092 rna-evm.model.Chr11.1092 Chr11 42744518 42747374 PREDICTED: P2Y purinoceptor 4 GO:0004930;GO:0007186;GO:0016020 K04238
gene-evm.TU.Chr11.1094 rna-evm.model.Chr11.1094 Chr11 43013057 43014357 uncharacterized protein nan nan
gene-evm.TU.Chr11.1095 rna-evm.model.Chr11.1095 Chr11 43014445 43025834 PREDICTED: synovial sarcoma, X breakpoint 2 interacting protein nan nan
gene-evm.TU.Chr11.1096 rna-evm.model.Chr11.1096 Chr11 43054671 43071996 PREDICTED: Zwei Ig domain protein zig-8 nan K06774
gene-evm.TU.Chr11.1099 rna-evm.model.Chr11.1099 Chr11 43385958 43406414 PREDICTED: Zwei Ig domain protein zig-8 nan K06774
gene-evm.TU.Chr11.110 rna-evm.model.Chr11.110 Chr11 4884865 4888506 PREDICTED: glucuronosyltransferase [EC:2.4.1.17] nan K04763
gene-evm.TU.Chr11.1101 rna-evm.model.Chr11.1101 Chr11 43467903 43469935 PREDICTED: Pogo transposable element with ZNF domain GO:0003676 K22594

For more detailed data, you can explore the Download section to access the full dataset.