CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1074 rna-evm.model.Chr11.1074 Chr11 41785145 41785744 PREDICTED: neurotensin receptor 1 GO:0008528 K08428
gene-evm.TU.Chr11.1075 rna-evm.model.Chr11.1075 Chr11 41795810 41798969 PREDICTED: Growth hormone secretagogue receptor type 1 GO:0004930;GO:0007186;GO:0016020 K08428
gene-evm.TU.Chr11.1077 rna-evm.model.Chr11.1077 Chr11 41817045 41837281 PREDICTED: Growth hormone secretagogue receptor type 1 GO:0004930;GO:0007186;GO:0016020 K08428
gene-evm.TU.Chr11.1079 rna-evm.model.Chr11.1079 Chr11 41860533 41860952 uncharacterized protein nan nan
gene-evm.TU.Chr11.108 rna-evm.model.Chr11.108 Chr11 4688313 4689368 PREDICTED: exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] nan K12211
gene-evm.TU.Chr11.1080 rna-evm.model.Chr11.1080 Chr11 41944282 41949922 uncharacterized protein nan nan
gene-evm.TU.Chr11.1081 rna-evm.model.Chr11.1081 Chr11 41988611 41991398 PREDICTED: Jerky protein homolog-like GO:0003676;GO:0003677 K17580
gene-evm.TU.Chr11.1083 rna-evm.model.Chr11.1083 Chr11 42077145 42078074 PREDICTED: solute carrier family 15, member 5 nan nan
gene-evm.TU.Chr11.1084 rna-evm.model.Chr11.1084 Chr11 42081888 42082817 PREDICTED: solute carrier family 15, member 5 nan nan
gene-evm.TU.Chr11.1087 rna-evm.model.Chr11.1087 Chr11 42419594 42425291 PREDICTED: protein MPAN nan K23168

For more detailed data, you can explore the Download section to access the full dataset.