CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1062 rna-evm.model.Chr11.1062 Chr11 41021592 41021863 PREDICTED: Heat shock 70 kDa protein 12A nan K24851
gene-evm.TU.Chr11.1064 rna-evm.model.Chr11.1064 Chr11 41136051 41136566 uncharacterized protein nan nan
gene-evm.TU.Chr11.1065 rna-evm.model.Chr11.1065 Chr11 41170664 41174287 PREDICTED: THAP domain-containing protein 7 GO:0003676 K23204
gene-evm.TU.Chr11.1066 rna-evm.model.Chr11.1066 Chr11 41179035 41181316 uncharacterized protein nan nan
gene-evm.TU.Chr11.1067 rna-evm.model.Chr11.1067 Chr11 41363502 41367472 uncharacterized protein nan K09427
gene-evm.TU.Chr11.1068 rna-evm.model.Chr11.1068 Chr11 41369911 41374282 PREDICTED: Protein ALP1-like nan K23222
gene-evm.TU.Chr11.1069 rna-evm.model.Chr11.1069 Chr11 41378475 41379950 PREDICTED: AF4/FMR2 family member 4 nan K11126
gene-evm.TU.Chr11.1070 rna-evm.model.Chr11.1070 Chr11 41582432 41585715 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr11.1071 rna-evm.model.Chr11.1071 Chr11 41626603 41711738 PREDICTED: Zinc finger RNA-binding protein GO:0003676;GO:0008270 K13203
gene-evm.TU.Chr11.1072 rna-evm.model.Chr11.1072 Chr11 41724787 41736010 PREDICTED: Guanine nucleotide-binding protein subunit beta-5 GO:0005515;GO:0007165 K04539

For more detailed data, you can explore the Download section to access the full dataset.