CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1051 rna-evm.model.Chr11.1051 Chr11 40500466 40548802 PREDICTED: Fibrillin-2 GO:0004867;GO:0005509 K23342
gene-evm.TU.Chr11.1054 rna-evm.model.Chr11.1054 Chr11 40671293 40672540 PREDICTED: P2Y purinoceptor 2 GO:0004930;GO:0007186;GO:0016020 K04305
gene-evm.TU.Chr11.1055 rna-evm.model.Chr11.1055 Chr11 40685573 40699303 uncharacterized protein nan nan
gene-evm.TU.Chr11.1056 rna-evm.model.Chr11.1056 Chr11 40717060 40717653 uncharacterized protein nan K17945
gene-evm.TU.Chr11.1057 rna-evm.model.Chr11.1057 Chr11 40717656 40723925 PREDICTED: CD109 antigen nan nan
gene-evm.TU.Chr11.1058 rna-evm.model.Chr11.1058.1 Chr11 40834824 40880821 PREDICTED: Sodium- and chloride-dependent glycine transporter 2 GO:0016020 K05038
gene-evm.TU.Chr11.1059 rna-evm.model.Chr11.1059 Chr11 40891140 40923437 PREDICTED: Coiled-coil domain-containing protein 171 nan K11499
gene-evm.TU.Chr11.106 rna-evm.model.Chr11.106 Chr11 4650157 4650664 uncharacterized protein nan K12731
gene-evm.TU.Chr11.1060 rna-evm.model.Chr11.1060 Chr11 40984547 40985194 PREDICTED: ATP-binding cassette, subfamily C (CFTR/MRP), member 4 nan K06395
gene-evm.TU.Chr11.1061 rna-evm.model.Chr11.1061 Chr11 40988916 41021512 PREDICTED: Heat shock 70 kDa protein 12B nan K04043

For more detailed data, you can explore the Download section to access the full dataset.