CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1034 rna-evm.model.Chr11.1034 Chr11 39955802 39956362 PREDICTED: E1A/CREB-binding protein [EC:2.3.1.48] nan K11799
gene-evm.TU.Chr11.1035 rna-evm.model.Chr11.1035 Chr11 40003404 40023814 PREDICTED: Sodium- and chloride-dependent glycine transporter 2 GO:0016020 K05038
gene-evm.TU.Chr11.1036 rna-evm.model.Chr11.1036 Chr11 40075354 40120574 PREDICTED: Temptin nan nan
gene-evm.TU.Chr11.1039 rna-evm.model.Chr11.1039 Chr11 40285045 40291641 uncharacterized protein nan K01205
gene-evm.TU.Chr11.104 rna-evm.model.Chr11.104 Chr11 4481426 4485221 PREDICTED: Serine protease 27 GO:0004252;GO:0006508 K09640
gene-evm.TU.Chr11.1040 rna-evm.model.Chr11.1040 Chr11 40297593 40299160 uncharacterized protein nan nan
gene-evm.TU.Chr11.1042 rna-evm.model.Chr11.1042 Chr11 40329809 40333523 PREDICTED: THAP domain-containing protein 10 GO:0003676 K23207
gene-evm.TU.Chr11.1045 rna-evm.model.Chr11.1045 Chr11 40379087 40382791 PREDICTED: dual specificity phosphatase 12 [EC:3.1.3.16 3.1.3.48] nan nan
gene-evm.TU.Chr11.105 rna-evm.model.Chr11.105 Chr11 4612549 4614432 PREDICTED: G-protein coupled receptor 183-A GO:0004930;GO:0007186;GO:0016020 K04305
gene-evm.TU.Chr11.1050 rna-evm.model.Chr11.1050 Chr11 40465170 40479261 PREDICTED: Peptidylglycine alpha-hydroxylating monooxygenase GO:0003824;GO:0004497;GO:0005507;GO:0006518;GO:0016020;GO:0016715;GO:0055114 K00504

For more detailed data, you can explore the Download section to access the full dataset.