CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1018 rna-evm.model.Chr11.1018 Chr11 39114796 39231688 PREDICTED: Xanthine dehydrogenase/oxidase GO:0016491;GO:0046872;GO:0055114;GO:0071949 K00106
gene-evm.TU.Chr11.102 rna-evm.model.Chr11.102 Chr11 4450132 4462974 PREDICTED: Ficolin-2 nan K10104
gene-evm.TU.Chr11.1020 rna-evm.model.Chr11.1020 Chr11 39292637 39296721 PREDICTED: inner nuclear membrane protein Man1 nan K21233
gene-evm.TU.Chr11.1022 rna-evm.model.Chr11.1022 Chr11 39336526 39348764 PREDICTED: Protein GVQW3 GO:0015074 K07497
gene-evm.TU.Chr11.1025 rna-evm.model.Chr11.1025 Chr11 39536975 39541474 PREDICTED: Vasopressin V1a receptor GO:0004930;GO:0005000;GO:0007186;GO:0016020 K08434
gene-evm.TU.Chr11.1026 rna-evm.model.Chr11.1026 Chr11 39599458 39600540 PREDICTED: Temptin nan nan
gene-evm.TU.Chr11.1027 rna-evm.model.Chr11.1027 Chr11 39671804 39672175 PREDICTED: ATP-binding cassette, subfamily C (CFTR/MRP), member 4 nan nan
gene-evm.TU.Chr11.1028 rna-evm.model.Chr11.1028 Chr11 39723372 39725088 PREDICTED: Temptin nan nan
gene-evm.TU.Chr11.1029 rna-evm.model.Chr11.1029 Chr11 39725351 39745845 uncharacterized protein nan nan
gene-evm.TU.Chr11.1030 rna-evm.model.Chr11.1030 Chr11 39761266 39766039 PREDICTED: [Arg8]-vasotocin receptor GO:0004930;GO:0005000;GO:0007186;GO:0016020 K08434

For more detailed data, you can explore the Download section to access the full dataset.