CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1007 rna-evm.model.Chr11.1007 Chr11 38834913 38839465 PREDICTED: Follistatin GO:0005515 K04661
gene-evm.TU.Chr11.1008 rna-evm.model.Chr11.1008 Chr11 38927554 38943254 PREDICTED: Angiogenic factor with G patch and FHA domains 1 GO:0003676;GO:0005515 K13094
gene-evm.TU.Chr11.1009 rna-evm.model.Chr11.1009 Chr11 38951170 38955132 PREDICTED: neuromedin U receptor 1 GO:0016020 K08428
gene-evm.TU.Chr11.101 rna-evm.model.Chr11.101 Chr11 4438868 4444170 PREDICTED: piRNA biogenesis protein EXD1 GO:0003676;GO:0006139;GO:0008408 K18740
gene-evm.TU.Chr11.1010 rna-evm.model.Chr11.1010 Chr11 38966341 38974944 PREDICTED: Arginine kinase GO:0016301;GO:0016772 K00934
gene-evm.TU.Chr11.1013 rna-evm.model.Chr11.1013 Chr11 39054629 39064751 PREDICTED: Taurochenodeoxycholic 6 alpha-hydroxylase GO:0005506;GO:0016705;GO:0020037;GO:0055114 K15001
gene-evm.TU.Chr11.1014 rna-evm.model.Chr11.1014 Chr11 39064904 39068719 PREDICTED: Cytochrome P450 monooxygenase FSL4 GO:0005506;GO:0016705;GO:0020037;GO:0055114 K15001
gene-evm.TU.Chr11.1015 rna-evm.model.Chr11.1015 Chr11 39069939 39086487 PREDICTED: E3 ubiquitin-protein ligase hecd-1 GO:0004842;GO:0016567;GO:0046872 K10645
gene-evm.TU.Chr11.1016 rna-evm.model.Chr11.1016 Chr11 39097042 39099397 PREDICTED: Transcription intermediary factor 1-alpha GO:0008270 K12026
gene-evm.TU.Chr11.1017 rna-evm.model.Chr11.1017 Chr11 39103917 39111058 PREDICTED: tripartite motif-containing protein 45 GO:0008270 K12026

For more detailed data, you can explore the Download section to access the full dataset.