CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.978 rna-evm.model.Chr10.978 Chr10 31772420 31779505 PREDICTED: Hemicentin-1 nan K06749
gene-evm.TU.Chr10.979 rna-evm.model.Chr10.979 Chr10 31826793 31844526 PREDICTED: Collagen alpha-1(XII) chain GO:0005515 K19599
gene-evm.TU.Chr10.980 rna-evm.model.Chr10.980 Chr10 31886900 31891171 PREDICTED: ESCRT-I complex subunit TSG101 nan K04763
gene-evm.TU.Chr10.982 rna-evm.model.Chr10.982 Chr10 31952761 31971416 PREDICTED: Hemicentin-2 nan K25874
gene-evm.TU.Chr10.983 rna-evm.model.Chr10.983 Chr10 31994885 32006768 uncharacterized protein nan K06454
gene-evm.TU.Chr10.984 rna-evm.model.Chr10.984 Chr10 32041062 32041580 uncharacterized protein nan K08466
gene-evm.TU.Chr10.985 rna-evm.model.Chr10.985 Chr10 32041712 32042080 uncharacterized protein nan nan
gene-evm.TU.Chr10.987 rna-evm.model.Chr10.987 Chr10 32058694 32072598 uncharacterized protein nan K10135
gene-evm.TU.Chr10.990 rna-evm.model.Chr10.990 Chr10 32115266 32133856 PREDICTED: Nephrin GO:0005515 K24496
gene-evm.TU.Chr10.991 rna-evm.model.Chr10.991 Chr10 32138757 32139294 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.