CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.959 rna-evm.model.Chr10.959 Chr10 31251642 31252073 PREDICTED: ESCRT-I complex subunit TSG101 nan K10804
gene-evm.TU.Chr10.96 rna-evm.model.Chr10.96 Chr10 3519391 3520098 PREDICTED: general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) nan K15760
gene-evm.TU.Chr10.960 rna-evm.model.Chr10.960 Chr10 31252287 31255902 PREDICTED: protocadherin Fat 4 nan K04763
gene-evm.TU.Chr10.966 rna-evm.model.Chr10.966 Chr10 31474331 31494732 PREDICTED: Peroxidasin homolog GO:0005515 K24496
gene-evm.TU.Chr10.968 rna-evm.model.Chr10.968 Chr10 31560131 31561447 PREDICTED: DNA transposase THAP9 [EC:2.7.7.-] nan K23209
gene-evm.TU.Chr10.969 rna-evm.model.Chr10.969 Chr10 31562678 31563211 PREDICTED: DNA transposase THAP9 [EC:2.7.7.-] nan K23209
gene-evm.TU.Chr10.97 rna-evm.model.Chr10.97 Chr10 3611932 3638753 uncharacterized protein nan K11514
gene-evm.TU.Chr10.975 rna-evm.model.Chr10.975 Chr10 31711544 31717069 PREDICTED: Nephrin GO:0005515 K24496
gene-evm.TU.Chr10.976 rna-evm.model.Chr10.976 Chr10 31718750 31721017 PREDICTED: Nephrin nan K24496
gene-evm.TU.Chr10.977 rna-evm.model.Chr10.977 Chr10 31737440 31772152 PREDICTED: Nephrin GO:0005515 K24496

For more detailed data, you can explore the Download section to access the full dataset.