CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.925 rna-evm.model.Chr10.925 Chr10 30669111 30717659 PREDICTED: Period circadian protein nan K02633
gene-evm.TU.Chr10.926 rna-evm.model.Chr10.926 Chr10 30723810 30727355 PREDICTED: Zinc finger MYM-type protein 1 nan K24674
gene-evm.TU.Chr10.927 rna-evm.model.Chr10.927 Chr10 30727371 30728161 PREDICTED: 52 kDa repressor of the inhibitor of the protein kinase GO:0046983 K24674
gene-evm.TU.Chr10.928 rna-evm.model.Chr10.928 Chr10 30731938 30735407 PREDICTED: Dromaiocalcin-1 nan K06560
gene-evm.TU.Chr10.929 rna-evm.model.Chr10.929 Chr10 30739476 30747544 PREDICTED: Neurocan core protein nan K06560
gene-evm.TU.Chr10.93 rna-evm.model.Chr10.93 Chr10 3438379 3438844 uncharacterized protein nan K10917
gene-evm.TU.Chr10.930 rna-evm.model.Chr10.930 Chr10 30754620 30766430 PREDICTED: Sex peptide receptor GO:0008528;GO:0016020 K26200
gene-evm.TU.Chr10.931 rna-evm.model.Chr10.931 Chr10 30767951 30772732 PREDICTED: Sex peptide receptor GO:0008528;GO:0016020 K26200
gene-evm.TU.Chr10.932 rna-evm.model.Chr10.932 Chr10 30787897 30804400 PREDICTED: Tyrosine decarboxylase GO:0006520;GO:0016831;GO:0019752;GO:0030170 K22329
gene-evm.TU.Chr10.94 rna-evm.model.Chr10.94 Chr10 3438881 3440990 uncharacterized protein GO:0005515 K10450

For more detailed data, you can explore the Download section to access the full dataset.