CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1382 rna-evm.model.Chr1.1382 Chr1 44121327 44123045 PREDICTED: solute carrier family 15, member 5 nan K07497
gene-evm.TU.Chr1.1383 rna-evm.model.Chr1.1383 Chr1 44126086 44133811 PREDICTED: G2/M phase-specific E3 ubiquitin-protein ligase GO:0004842 K22371
gene-evm.TU.Chr1.1384 rna-evm.model.Chr1.1384 Chr1 44169018 44175484 PREDICTED: sentrin-specific protease 1 [EC:3.4.22.68] nan K15176
gene-evm.TU.Chr1.1385 rna-evm.model.Chr1.1385 Chr1 44243003 44244721 PREDICTED: DNA transposase THAP9 [EC:2.7.7.-] GO:0004803;GO:0006313 K23209
gene-evm.TU.Chr1.1386 rna-evm.model.Chr1.1386 Chr1 44248463 44254254 PREDICTED: ATP-dependent DNA helicase PIF1 GO:0000723;GO:0003678;GO:0006281 K15255
gene-evm.TU.Chr1.1387 rna-evm.model.Chr1.1387 Chr1 44240609 44272854 PREDICTED: ATP-binding cassette sub-family E member 1 GO:0005524;GO:0016887 K06174
gene-evm.TU.Chr1.1389 rna-evm.model.Chr1.1389 Chr1 44434558 44434720 PREDICTED: Integrase/recombinase xerD-like nan nan
gene-evm.TU.Chr1.139 rna-evm.model.Chr1.139 Chr1 4603725 4645343 PREDICTED: Multiple epidermal growth factor-like domains protein 6 nan K24333
gene-evm.TU.Chr1.1390 rna-evm.model.Chr1.1390 Chr1 44435239 44439226 uncharacterized protein nan K26892
gene-evm.TU.Chr1.1391 rna-evm.model.Chr1.1391 Chr1 44467667 44480946 PREDICTED: Cyclic nucleotide-gated channel cone photoreceptor subunit alpha GO:0005216;GO:0006811;GO:0016020;GO:0055085 K04949

For more detailed data, you can explore the Download section to access the full dataset.