CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.899 rna-evm.model.Chr10.899 Chr10 30142360 30145059 PREDICTED: Sex peptide receptor GO:0004930;GO:0007186;GO:0008528;GO:0016020 K26200
gene-evm.TU.Chr10.9 rna-evm.model.Chr10.9 Chr10 521992 534176 uncharacterized protein GO:0005515 K05126
gene-evm.TU.Chr10.901 rna-evm.model.Chr10.901 Chr10 30182720 30183436 PREDICTED: protection of telomeres protein 1 nan K21975
gene-evm.TU.Chr10.902 rna-evm.model.Chr10.902 Chr10 30201987 30203897 uncharacterized protein nan K17834
gene-evm.TU.Chr10.905 rna-evm.model.Chr10.905 Chr10 30226288 30238555 PREDICTED: Sodium- and chloride-dependent glycine transporter 1 GO:0016020 K05038
gene-evm.TU.Chr10.906 rna-evm.model.Chr10.906 Chr10 30248865 30262982 PREDICTED: Sodium- and chloride-dependent glycine transporter 1 GO:0016020 K05038
gene-evm.TU.Chr10.908 rna-evm.model.Chr10.908 Chr10 30282537 30319453 PREDICTED: Ceramide-1-phosphate transfer protein GO:0005737;GO:0120009;GO:0120013 K08051
gene-evm.TU.Chr10.909 rna-evm.model.Chr10.909 Chr10 30320647 30320955 PREDICTED: Transposable element Tcb2 transposase, partial nan K01536
gene-evm.TU.Chr10.91 rna-evm.model.Chr10.91 Chr10 3329772 3387576 PREDICTED: Laminin-like protein epi-1 nan K03529
gene-evm.TU.Chr10.910 rna-evm.model.Chr10.910 Chr10 30322734 30331492 PREDICTED: Pre-mRNA-splicing factor SPF27 GO:0006397 K12861

For more detailed data, you can explore the Download section to access the full dataset.