CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.911 rna-evm.model.Chr10.911.3 Chr10 30339714 30353863 PREDICTED: Leucine-rich repeat-containing protein 23 GO:0005515 K25549
gene-evm.TU.Chr10.912 rna-evm.model.Chr10.912 Chr10 30364197 30364597 PREDICTED: nuclease HARBI1 [EC:3.1.-.-] nan K23222
gene-evm.TU.Chr10.913 rna-evm.model.Chr10.913 Chr10 30376461 30378091 PREDICTED: zinc finger protein castor homolog 1 nan K25209
gene-evm.TU.Chr10.914 rna-evm.model.Chr10.914 Chr10 30413567 30430492 PREDICTED: E3 ubiquitin-protein ligase MIB2 GO:0004842;GO:0008270;GO:0016567;GO:0046872 K10645
gene-evm.TU.Chr10.916 rna-evm.model.Chr10.916 Chr10 30538859 30540951 PREDICTED: metacaspase type II, MCP1 nan K07344
gene-evm.TU.Chr10.917 rna-evm.model.Chr10.917 Chr10 30558079 30560415 uncharacterized protein nan K06872
gene-evm.TU.Chr10.918 rna-evm.model.Chr10.918 Chr10 30575639 30588246 uncharacterized protein nan K05480
gene-evm.TU.Chr10.919 rna-evm.model.Chr10.919 Chr10 30606165 30608883 PREDICTED: Autotransporter adhesin BtaF nan K11371
gene-evm.TU.Chr10.921 rna-evm.model.Chr10.921.1 Chr10 30627295 30630129 uncharacterized protein nan K08127
gene-evm.TU.Chr10.922 rna-evm.model.Chr10.922 Chr10 30633983 30635701 uncharacterized protein nan K05759

For more detailed data, you can explore the Download section to access the full dataset.