CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.885 rna-evm.model.Chr10.885 Chr10 29531924 29532167 uncharacterized protein nan K03444
gene-evm.TU.Chr10.886 rna-evm.model.Chr10.886 Chr10 29639853 29640248 PREDICTED: histone-lysine N-methyltransferase SETMAR [EC:2.1.1.43] nan nan
gene-evm.TU.Chr10.887 rna-evm.model.Chr10.887 Chr10 29758876 29791025 uncharacterized protein GO:0005515 K06478
gene-evm.TU.Chr10.889_evm.TU.Chr10.890 rna-evm.model.Chr10.889_evm.model.Chr10.890 Chr10 29845695 29898503 PREDICTED: Hemicentin-1 nan K17341
gene-evm.TU.Chr10.89 rna-evm.model.Chr10.89 Chr10 3206708 3259295 PREDICTED: Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 nan K13646
gene-evm.TU.Chr10.894 rna-evm.model.Chr10.894 Chr10 30037978 30053672 PREDICTED: Probable G-protein coupled receptor 153 GO:0004930;GO:0007186;GO:0016020 K08437
gene-evm.TU.Chr10.895 rna-evm.model.Chr10.895 Chr10 30061760 30065546 PREDICTED: Complement C1q-like protein 4 nan K23284
gene-evm.TU.Chr10.896 rna-evm.model.Chr10.896 Chr10 30070577 30073764 PREDICTED: Inositol phosphoceramide mannosyltransferase 3 nan K22721
gene-evm.TU.Chr10.897 rna-evm.model.Chr10.897 Chr10 30100284 30108876 PREDICTED: 60S ribosomal protein L22 GO:0003735;GO:0005840;GO:0006412 K02891
gene-evm.TU.Chr10.898 rna-evm.model.Chr10.898.1 Chr10 30112280 30134298 PREDICTED: AP-2 complex subunit mu GO:0006886;GO:0016192;GO:0030131 K11826

For more detailed data, you can explore the Download section to access the full dataset.