CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.857 rna-evm.model.Chr10.857 Chr10 28387279 28392677 PREDICTED: Caprin-2 nan K24237
gene-evm.TU.Chr10.858 rna-evm.model.Chr10.858 Chr10 28396530 28436471 PREDICTED: Complement C1q tumor necrosis factor-related protein 4 nan K24237
gene-evm.TU.Chr10.86 rna-evm.model.Chr10.86 Chr10 2905666 3024421 PREDICTED: ankyrin repeat domain-containing protein 50 nan K25356
gene-evm.TU.Chr10.860 rna-evm.model.Chr10.860 Chr10 28512182 28517722 PREDICTED: G-protein coupled receptor GRL101 GO:0004930;GO:0005515;GO:0007186;GO:0016020;GO:0016500 K04307
gene-evm.TU.Chr10.861 rna-evm.model.Chr10.861.1 Chr10 28534497 28544385 PREDICTED: Zinc finger protein 384 GO:0003676 K23480
gene-evm.TU.Chr10.862 rna-evm.model.Chr10.862 Chr10 28544417 28554003 PREDICTED: Transmembrane protein 185B nan K24915
gene-evm.TU.Chr10.863 rna-evm.model.Chr10.863 Chr10 28564982 28602085 PREDICTED: Hepatocyte growth factor GO:0005515 K01315
gene-evm.TU.Chr10.864 rna-evm.model.Chr10.864 Chr10 28606832 28613615 PREDICTED: sentrin-specific protease 1 [EC:3.4.22.68] nan K18252
gene-evm.TU.Chr10.866 rna-evm.model.Chr10.866 Chr10 28655539 28659805 PREDICTED: Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase GO:0008033;GO:0008168;GO:0008175;GO:0032259 K14864
gene-evm.TU.Chr10.867 rna-evm.model.Chr10.867 Chr10 28663462 28684801 PREDICTED: Activated CDC42 kinase 1 GO:0004672;GO:0004713;GO:0005515;GO:0005524;GO:0006468 K08886

For more detailed data, you can explore the Download section to access the full dataset.