CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.869_evm.TU.Chr10.868 rna-evm.model.Chr10.869_evm.model.Chr10.868 Chr10 28695115 28737603 PREDICTED: pre-mRNA 3' end processing protein WDR33 GO:0005515 K15542
gene-evm.TU.Chr10.870 rna-evm.model.Chr10.870 Chr10 28737966 28759916 PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 GO:0004721;GO:0005634;GO:0006397 K15544
gene-evm.TU.Chr10.871 rna-evm.model.Chr10.871 Chr10 28768177 28779017 PREDICTED: Protein phosphatase 1 regulatory subunit 7 GO:0005515 K17550
gene-evm.TU.Chr10.872 rna-evm.model.Chr10.872 Chr10 28787278 28788474 uncharacterized protein nan nan
gene-evm.TU.Chr10.874 rna-evm.model.Chr10.874 Chr10 28887163 28890551 PREDICTED: Ankyrin repeat domain-containing protein 1 GO:0005515 K15502
gene-evm.TU.Chr10.875 rna-evm.model.Chr10.875 Chr10 28895152 28906074 PREDICTED: Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase GO:0000030;GO:0030176 K03845
gene-evm.TU.Chr10.879 rna-evm.model.Chr10.879 Chr10 28936546 28940611 PREDICTED: Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase GO:0008375;GO:0016020 K00727
gene-evm.TU.Chr10.88 rna-evm.model.Chr10.88 Chr10 3160675 3177518 PREDICTED: ankyrin repeat domain-containing protein 50 nan K08501
gene-evm.TU.Chr10.880 rna-evm.model.Chr10.880 Chr10 29037761 29039331 PREDICTED: Mariner Mos1 transposase nan nan
gene-evm.TU.Chr10.884 rna-evm.model.Chr10.884 Chr10 29362359 29363649 PREDICTED: Cholecystokinin receptor GO:0004930;GO:0007186;GO:0016020 K04238

For more detailed data, you can explore the Download section to access the full dataset.