CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.844 rna-evm.model.Chr10.844 Chr10 27262567 27263859 PREDICTED: Neuropeptide FF receptor 2 GO:0004930;GO:0007186;GO:0016020 K04238
gene-evm.TU.Chr10.845 rna-evm.model.Chr10.845 Chr10 27331414 27331959 PREDICTED: BR serine/threonine kinase [EC:2.7.11.1] nan K26803
gene-evm.TU.Chr10.847 rna-evm.model.Chr10.847 Chr10 27397206 27406073 PREDICTED: exocyst complex component 1 nan nan
gene-evm.TU.Chr10.848 rna-evm.model.Chr10.848 Chr10 27502588 27517197 uncharacterized protein nan K18032
gene-evm.TU.Chr10.850 rna-evm.model.Chr10.850 Chr10 27566419 27571399 uncharacterized protein nan nan
gene-evm.TU.Chr10.851 rna-evm.model.Chr10.851 Chr10 27687273 27689756 PREDICTED: DNA transposase THAP9 [EC:2.7.7.-] GO:0004803;GO:0006313 K23209
gene-evm.TU.Chr10.852 rna-evm.model.Chr10.852 Chr10 27705167 27740494 PREDICTED: Neuropeptide FF receptor 1 GO:0004930;GO:0007186;GO:0016020 K04194
gene-evm.TU.Chr10.853 rna-evm.model.Chr10.853 Chr10 27714490 27715816 PREDICTED: Neuropeptide FF receptor 2 GO:0004930;GO:0007186;GO:0016020 K04238
gene-evm.TU.Chr10.855 rna-evm.model.Chr10.855 Chr10 28339526 28348266 PREDICTED: solute carrier family 8 (sodium/calcium exchanger) nan K16038
gene-evm.TU.Chr10.856 rna-evm.model.Chr10.856 Chr10 28352209 28355125 PREDICTED: U3 small nucleolar RNA-associated protein 19 nan K05220

For more detailed data, you can explore the Download section to access the full dataset.