CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.832 rna-evm.model.Chr10.832 Chr10 26577787 26593647 PREDICTED: Acid-sensing ion channel 1 GO:0005272;GO:0006814;GO:0016020 K04829
gene-evm.TU.Chr10.834 rna-evm.model.Chr10.834 Chr10 26604771 26617565 PREDICTED: Zinc finger protein 79 GO:0003676 K09228
gene-evm.TU.Chr10.836 rna-evm.model.Chr10.836 Chr10 26642216 26648313 uncharacterized protein nan nan
gene-evm.TU.Chr10.838 rna-evm.model.Chr10.838 Chr10 26669595 26676832 PREDICTED: p24 family protein gamma-5 nan K20351
gene-evm.TU.Chr10.839 rna-evm.model.Chr10.839 Chr10 26689907 26728042 PREDICTED: G-protein coupled receptor 157 GO:0004888;GO:0007166;GO:0016020 K08467
gene-evm.TU.Chr10.84 rna-evm.model.Chr10.84 Chr10 2771977 2774068 uncharacterized protein GO:0003677 K24688
gene-evm.TU.Chr10.840 rna-evm.model.Chr10.840 Chr10 26733396 26738347 PREDICTED: G-protein coupled receptor 157 GO:0004888;GO:0007166;GO:0016020 K08467
gene-evm.TU.Chr10.841 rna-evm.model.Chr10.841 Chr10 26741577 26745555 PREDICTED: G-protein coupled receptor 157 GO:0004888;GO:0004930;GO:0007166;GO:0007186;GO:0016020 K08467
gene-evm.TU.Chr10.842 rna-evm.model.Chr10.842 Chr10 26844259 26952737 PREDICTED: Fibronectin type III domain-containing protein 5 GO:0005515 K24486
gene-evm.TU.Chr10.843 rna-evm.model.Chr10.843 Chr10 27210205 27218436 PREDICTED: complement component 4 nan K10374

For more detailed data, you can explore the Download section to access the full dataset.