CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.82 rna-evm.model.Chr10.82 Chr10 2701262 2711989 uncharacterized protein nan K08231
gene-evm.TU.Chr10.820 rna-evm.model.Chr10.820 Chr10 26251237 26254827 PREDICTED: Cytochrome b5 domain-containing protein 1 nan K21734
gene-evm.TU.Chr10.821 rna-evm.model.Chr10.821 Chr10 26262411 26299291 PREDICTED: Ubiquitin conjugation factor E4 B GO:0000151;GO:0004842;GO:0006511;GO:0016567;GO:0034450 K10597
gene-evm.TU.Chr10.823 rna-evm.model.Chr10.823 Chr10 26299516 26322027 PREDICTED: Solute carrier family 35 member E2A nan K15284
gene-evm.TU.Chr10.824 rna-evm.model.Chr10.824 Chr10 26331857 26353895 PREDICTED: Integrator complex subunit 11 nan K13148
gene-evm.TU.Chr10.825 rna-evm.model.Chr10.825 Chr10 26354104 26357574 PREDICTED: Ceramide-1-phosphate transfer protein GO:0005737;GO:0120009;GO:0120013 K08051
gene-evm.TU.Chr10.827 rna-evm.model.Chr10.827 Chr10 26367971 26371700 PREDICTED: tripartite motif-containing protein 2/3 GO:0008270 K12026
gene-evm.TU.Chr10.83 rna-evm.model.Chr10.83 Chr10 2727978 2743818 PREDICTED: ankyrin repeat domain-containing protein 50 nan K04528
gene-evm.TU.Chr10.830 rna-evm.model.Chr10.830 Chr10 26541329 26542060 uncharacterized protein nan nan
gene-evm.TU.Chr10.831_evm.TU.Chr10.829 rna-evm.model.Chr10.831_evm.model.Chr10.829 Chr10 26426796 26572252 PREDICTED: Nucleolar complex protein 2 homolog nan K14833

For more detailed data, you can explore the Download section to access the full dataset.