CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.809 rna-evm.model.Chr10.809 Chr10 25771853 25772482 PREDICTED: L-ascorbate oxidase GO:0005507 K00423
gene-evm.TU.Chr10.81 rna-evm.model.Chr10.81 Chr10 2622909 2701011 PREDICTED: Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 nan K13646
gene-evm.TU.Chr10.810 rna-evm.model.Chr10.810 Chr10 25778939 25785837 PREDICTED: Galaxin nan K19636
gene-evm.TU.Chr10.811 rna-evm.model.Chr10.811 Chr10 25806985 25809010 PREDICTED: Galaxin nan K19636
gene-evm.TU.Chr10.812 rna-evm.model.Chr10.812 Chr10 25812633 25815146 PREDICTED: Galaxin nan K19636
gene-evm.TU.Chr10.813 rna-evm.model.Chr10.813 Chr10 25821013 25830527 PREDICTED: Protein LZIC GO:0008013 K04493
gene-evm.TU.Chr10.814 rna-evm.model.Chr10.814 Chr10 25961536 25978994 uncharacterized protein nan K13052
gene-evm.TU.Chr10.817 rna-evm.model.Chr10.817 Chr10 26125553 26128048 PREDICTED: Substance-K receptor GO:0004930;GO:0007186;GO:0016020 K08375
gene-evm.TU.Chr10.818 rna-evm.model.Chr10.818 Chr10 26137665 26140590 PREDICTED: Neuropeptide FF receptor 2 GO:0004930;GO:0007186;GO:0016020 K08375
gene-evm.TU.Chr10.819 rna-evm.model.Chr10.819 Chr10 26240227 26243490 PREDICTED: N-alpha-acetyltransferase 38, NatC auxiliary subunit GO:0031417 K20824

For more detailed data, you can explore the Download section to access the full dataset.