CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.789 rna-evm.model.Chr10.789 Chr10 25269625 25273926 PREDICTED: Transmembrane protease serine 9 GO:0004252;GO:0006508 K09639
gene-evm.TU.Chr10.79 rna-evm.model.Chr10.79 Chr10 2484390 2512361 PREDICTED: Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 nan K13646
gene-evm.TU.Chr10.790 rna-evm.model.Chr10.790 Chr10 25282657 25283063 uncharacterized protein nan nan
gene-evm.TU.Chr10.791 rna-evm.model.Chr10.791 Chr10 25283495 25304601 PREDICTED: Hillarin nan K24456
gene-evm.TU.Chr10.793 rna-evm.model.Chr10.793 Chr10 25310194 25312648 PREDICTED: Mannosyl phosphorylinositol ceramide synthase CSH1 nan K22721
gene-evm.TU.Chr10.794 rna-evm.model.Chr10.794 Chr10 25319404 25337098 PREDICTED: Hillarin nan K24456
gene-evm.TU.Chr10.795 rna-evm.model.Chr10.795 Chr10 25370497 25374323 PREDICTED: Carbohydrate sulfotransferase 1 GO:0008146 K01022
gene-evm.TU.Chr10.796 rna-evm.model.Chr10.796.1 Chr10 25406598 25428605 PREDICTED: Membrane metallo-endopeptidase-like 1 GO:0004222;GO:0006508 K08635
gene-evm.TU.Chr10.797 rna-evm.model.Chr10.797 Chr10 25458970 25461658 uncharacterized protein nan nan
gene-evm.TU.Chr10.798 rna-evm.model.Chr10.798 Chr10 25469232 25472760 uncharacterized protein nan K17643

For more detailed data, you can explore the Download section to access the full dataset.