CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1365 rna-evm.model.Chr1.1365 Chr1 43044731 43081577 PREDICTED: Glutamate receptor ionotropic, kainate 2 GO:0004970;GO:0016020 K05202
gene-evm.TU.Chr1.1366 rna-evm.model.Chr1.1366 Chr1 43085631 43087695 PREDICTED: Chymotrypsin BI GO:0004252;GO:0006508 K09628
gene-evm.TU.Chr1.1367 rna-evm.model.Chr1.1367 Chr1 43095400 43099970 uncharacterized protein nan nan
gene-evm.TU.Chr1.1369 rna-evm.model.Chr1.1369 Chr1 43154564 43160153 PREDICTED: Neurogenic locus Notch protein GO:0005509;GO:0005576;GO:0006030;GO:0008061 K02599
gene-evm.TU.Chr1.1370 rna-evm.model.Chr1.1370 Chr1 43191843 43199494 PREDICTED: Transient receptor potential cation channel subfamily A member 1 homolog GO:0005216;GO:0006811;GO:0016020;GO:0055085 K04984
gene-evm.TU.Chr1.1372 rna-evm.model.Chr1.1372 Chr1 43373367 43375555 PREDICTED: 60 kDa SS-A/Ro ribonucleoprotein GO:0003723 K11089
gene-evm.TU.Chr1.1378 rna-evm.model.Chr1.1378 Chr1 43824415 43824795 uncharacterized protein nan K02992
gene-evm.TU.Chr1.1379 rna-evm.model.Chr1.1379 Chr1 43824796 43833936 PREDICTED: glucuronyl/N-acetylglucosaminyl transferase EXT1 [EC:2.4.1.224 2.4.1.225] nan nan
gene-evm.TU.Chr1.138 rna-evm.model.Chr1.138 Chr1 4574526 4593917 PREDICTED: Receptor-type tyrosine-protein phosphatase T GO:0004725;GO:0006470;GO:0016311;GO:0016791 K06776
gene-evm.TU.Chr1.1380 rna-evm.model.Chr1.1380 Chr1 43867457 43923286 PREDICTED: Putative carbonic anhydrase-like protein 2 GO:0004089;GO:0008270 K01672

For more detailed data, you can explore the Download section to access the full dataset.