CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.777 rna-evm.model.Chr10.777 Chr10 25044260 25054763 PREDICTED: UPF0488 protein C8orf33 homolog nan nan
gene-evm.TU.Chr10.778 rna-evm.model.Chr10.778 Chr10 25063469 25077831 PREDICTED: Lipoma-preferred partner homolog nan K16676
gene-evm.TU.Chr10.779 rna-evm.model.Chr10.779 Chr10 25086667 25087542 PREDICTED: tripartite motif-containing protein 56 [EC:2.3.2.27] nan K11997
gene-evm.TU.Chr10.780 rna-evm.model.Chr10.780 Chr10 25089524 25108043 PREDICTED: Sodium- and chloride-dependent glycine transporter 2 GO:0016020 K05038
gene-evm.TU.Chr10.781 rna-evm.model.Chr10.781 Chr10 25138240 25139596 PREDICTED: Protein trunk nan K20226
gene-evm.TU.Chr10.782 rna-evm.model.Chr10.782 Chr10 25145702 25165983 PREDICTED: Fibulin-5 GO:0005509 K17307
gene-evm.TU.Chr10.783 rna-evm.model.Chr10.783 Chr10 25180834 25196978 PREDICTED: Deacetylase EF_0837 GO:0016787;GO:0019213 K01465
gene-evm.TU.Chr10.784 rna-evm.model.Chr10.784 Chr10 25202598 25210234 uncharacterized protein nan nan
gene-evm.TU.Chr10.786 rna-evm.model.Chr10.786 Chr10 25228645 25229083 uncharacterized protein GO:0003677;GO:0006310;GO:0015074 K04763
gene-evm.TU.Chr10.787 rna-evm.model.Chr10.787 Chr10 25229125 25230301 PREDICTED: BTB/POZ domain-containing protein KCTD1/15 nan K24675

For more detailed data, you can explore the Download section to access the full dataset.