CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.765 rna-evm.model.Chr10.765 Chr10 24670287 24673496 PREDICTED: complement component 4 nan K10374
gene-evm.TU.Chr10.766 rna-evm.model.Chr10.766 Chr10 24709347 24711358 PREDICTED: complement component 4 nan K12467
gene-evm.TU.Chr10.767 rna-evm.model.Chr10.767 Chr10 24722583 24723023 PREDICTED: complement component 4 nan nan
gene-evm.TU.Chr10.769 rna-evm.model.Chr10.769 Chr10 24727314 24727877 PREDICTED: histone-lysine N-methyltransferase SETMAR [EC:2.1.1.43] nan K21828
gene-evm.TU.Chr10.77 rna-evm.model.Chr10.77 Chr10 2378330 2390836 PREDICTED: ankyrin repeat domain-containing protein 50 nan nan
gene-evm.TU.Chr10.771 rna-evm.model.Chr10.771 Chr10 24765584 24765940 uncharacterized protein nan nan
gene-evm.TU.Chr10.772 rna-evm.model.Chr10.772 Chr10 24847757 24860517 uncharacterized protein nan K10398
gene-evm.TU.Chr10.774 rna-evm.model.Chr10.774 Chr10 24936660 24938511 uncharacterized protein GO:0004553;GO:0016052;GO:0030246 nan
gene-evm.TU.Chr10.775 rna-evm.model.Chr10.775 Chr10 24940484 24942167 uncharacterized protein GO:0004553;GO:0016052;GO:0030246 nan
gene-evm.TU.Chr10.776 rna-evm.model.Chr10.776.3 Chr10 24945755 24963142 PREDICTED: Transmembrane emp24 domain-containing protein 6 nan K20351

For more detailed data, you can explore the Download section to access the full dataset.