CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.708 rna-evm.model.Chr10.708 Chr10 22144416 22161606 PREDICTED: Voltage-gated potassium channel subunit beta-2 GO:0006813;GO:0016020;GO:0055085 K04883
gene-evm.TU.Chr10.709 rna-evm.model.Chr10.709 Chr10 22162246 22172559 PREDICTED: Voltage-gated potassium channel subunit beta-1 nan K04883
gene-evm.TU.Chr10.71 rna-evm.model.Chr10.71 Chr10 2298028 2299280 PREDICTED: Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 nan K13646
gene-evm.TU.Chr10.712 rna-evm.model.Chr10.712 Chr10 22356741 22366922 PREDICTED: Voltage-gated potassium channel subunit beta-2 GO:0006813;GO:0016020;GO:0055085 K04883
gene-evm.TU.Chr10.713 rna-evm.model.Chr10.713 Chr10 22367220 22389785 PREDICTED: Voltage-gated potassium channel subunit beta-1 nan K04883
gene-evm.TU.Chr10.714 rna-evm.model.Chr10.714 Chr10 22476169 22483039 PREDICTED: Probable transporter MCH1 GO:0016020;GO:0055085 K08177
gene-evm.TU.Chr10.716 rna-evm.model.Chr10.716 Chr10 22761714 22770598 PREDICTED: Mitotic spindle assembly checkpoint protein MAD2B nan K13728
gene-evm.TU.Chr10.718 rna-evm.model.Chr10.718 Chr10 22803186 22831759 PREDICTED: Protein smg8 GO:0000184 K18734
gene-evm.TU.Chr10.719 rna-evm.model.Chr10.719 Chr10 22834981 22852481 uncharacterized protein nan K04782
gene-evm.TU.Chr10.72 rna-evm.model.Chr10.72 Chr10 2300327 2303292 PREDICTED: Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 nan K13646

For more detailed data, you can explore the Download section to access the full dataset.