CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.690 rna-evm.model.Chr10.690 Chr10 21313770 21335600 uncharacterized protein nan K10306
gene-evm.TU.Chr10.691 rna-evm.model.Chr10.691 Chr10 21380387 21382247 uncharacterized protein nan nan
gene-evm.TU.Chr10.694 rna-evm.model.Chr10.694 Chr10 21426710 21427378 PREDICTED: Zinc finger protein 782 GO:0003676 K09191
gene-evm.TU.Chr10.698 rna-evm.model.Chr10.698 Chr10 21528139 21537959 uncharacterized protein nan K07992
gene-evm.TU.Chr10.699 rna-evm.model.Chr10.699 Chr10 21593001 21619879 PREDICTED: Voltage-gated potassium channel subunit beta-2 nan K04883
gene-evm.TU.Chr10.70 rna-evm.model.Chr10.70 Chr10 2287419 2295957 PREDICTED: Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 nan K13646
gene-evm.TU.Chr10.701 rna-evm.model.Chr10.701 Chr10 21683065 21697950 PREDICTED: mediator of RNA polymerase II transcription subunit 25 GO:0005515;GO:0007165;GO:0042981 K08844
gene-evm.TU.Chr10.703 rna-evm.model.Chr10.703 Chr10 21828913 21835002 PREDICTED: Placenta-specific gene 8 protein nan nan
gene-evm.TU.Chr10.705 rna-evm.model.Chr10.705 Chr10 21856934 21859057 uncharacterized protein nan nan
gene-evm.TU.Chr10.707 rna-evm.model.Chr10.707 Chr10 21990374 22037904 PREDICTED: Voltage-gated potassium channel subunit beta-2 GO:0006813;GO:0016020;GO:0055085 K04883

For more detailed data, you can explore the Download section to access the full dataset.