CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.660 rna-evm.model.Chr10.660 Chr10 20357731 20399271 PREDICTED: Trifunctional purine biosynthetic protein adenosine-3 GO:0004637;GO:0004641;GO:0005524;GO:0006189;GO:0009058;GO:0009113;GO:0016742;GO:0046872 K11787
gene-evm.TU.Chr10.661 rna-evm.model.Chr10.661 Chr10 20416987 20419227 PREDICTED: pedal peptide preprohormone GO:0005184 nan
gene-evm.TU.Chr10.662 rna-evm.model.Chr10.662 Chr10 20555176 20579693 PREDICTED: Orcokinin peptides type B GO:0005184 nan
gene-evm.TU.Chr10.665 rna-evm.model.Chr10.665 Chr10 20655248 20655661 PREDICTED: Zinc finger BED domain-containing protein 1 nan K24637
gene-evm.TU.Chr10.667 rna-evm.model.Chr10.667 Chr10 20785676 20788314 uncharacterized protein nan nan
gene-evm.TU.Chr10.669 rna-evm.model.Chr10.669 Chr10 20827739 20828047 PREDICTED: fumarate hydratase, class II [EC:4.2.1.2] nan K04816
gene-evm.TU.Chr10.67 rna-evm.model.Chr10.67 Chr10 2208141 2211540 PREDICTED: P2X purinoceptor 7 GO:0001614;GO:0005216;GO:0005524;GO:0006811;GO:0016020 K05220
gene-evm.TU.Chr10.671 rna-evm.model.Chr10.671 Chr10 20847063 20847734 PREDICTED: solute carrier family 15, member 5 nan nan
gene-evm.TU.Chr10.672 rna-evm.model.Chr10.672 Chr10 20858743 20865511 PREDICTED: Placenta-specific gene 8 protein nan nan
gene-evm.TU.Chr10.676 rna-evm.model.Chr10.676 Chr10 21062693 21072547 uncharacterized protein nan K23285

For more detailed data, you can explore the Download section to access the full dataset.