CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.641 rna-evm.model.Chr10.641 Chr10 19567631 19571546 PREDICTED: U3 small nucleolar RNA-associated protein 22 nan nan
gene-evm.TU.Chr10.645 rna-evm.model.Chr10.645 Chr10 19805117 19806591 PREDICTED: Galanin receptor type 2 GO:0004930;GO:0007186;GO:0016020 K04194
gene-evm.TU.Chr10.646 rna-evm.model.Chr10.646 Chr10 19894875 19895150 PREDICTED: Integrase/recombinase xerD-like nan nan
gene-evm.TU.Chr10.648 rna-evm.model.Chr10.648 Chr10 20024383 20063028 PREDICTED: N-lysine methyltransferase KMT5A-A GO:0005515 K11428
gene-evm.TU.Chr10.650 rna-evm.model.Chr10.650 Chr10 20077303 20089209 PREDICTED: Dopamine beta-hydroxylase GO:0004497;GO:0005507;GO:0016715;GO:0055114 K00503
gene-evm.TU.Chr10.652 rna-evm.model.Chr10.652 Chr10 20110307 20110618 PREDICTED: protein kinase D [EC:2.7.11.13] nan K16437
gene-evm.TU.Chr10.654 rna-evm.model.Chr10.654.2 Chr10 20206606 20266139 PREDICTED: Centrosomal protein of 104 kDa nan K16458
gene-evm.TU.Chr10.655 rna-evm.model.Chr10.655 Chr10 20270486 20276371 PREDICTED: DNA fragmentation factor subunit beta GO:0004536;GO:0005634;GO:0005737;GO:0006309;GO:0006915;GO:0016787 K02311
gene-evm.TU.Chr10.657 rna-evm.model.Chr10.657 Chr10 20309650 20328301 PREDICTED: G-protein coupled receptor GRL101 GO:0004930;GO:0005515;GO:0007186;GO:0016020;GO:0016500 K04307
gene-evm.TU.Chr10.659 rna-evm.model.Chr10.659 Chr10 20346557 20357625 PREDICTED: Caltractin GO:0005509 K16465

For more detailed data, you can explore the Download section to access the full dataset.