CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.677 rna-evm.model.Chr10.677 Chr10 21078269 21081451 uncharacterized protein nan K25493
gene-evm.TU.Chr10.678 rna-evm.model.Chr10.678 Chr10 21111589 21123408 PREDICTED: myosin XVIII nan K23612
gene-evm.TU.Chr10.679 rna-evm.model.Chr10.679 Chr10 21133317 21135395 PREDICTED: Caprin-2 nan K23284
gene-evm.TU.Chr10.68 rna-evm.model.Chr10.68 Chr10 2214367 2223666 PREDICTED: solute carrier family 8 (sodium/calcium exchanger) nan K16913
gene-evm.TU.Chr10.680 rna-evm.model.Chr10.680 Chr10 21139155 21148540 PREDICTED: Complement C1q-like protein 4 nan K24237
gene-evm.TU.Chr10.681 rna-evm.model.Chr10.681 Chr10 21150164 21171518 PREDICTED: Visual pigment-like receptor peropsin GO:0004930;GO:0007186;GO:0016020 K04253
gene-evm.TU.Chr10.682 rna-evm.model.Chr10.682 Chr10 21175462 21187025 PREDICTED: Fumarate hydratase class I, aerobic GO:0016829;GO:0016836 K01676
gene-evm.TU.Chr10.683 rna-evm.model.Chr10.683 Chr10 21190370 21192822 uncharacterized protein nan K18562
gene-evm.TU.Chr10.684 rna-evm.model.Chr10.684 Chr10 21194269 21195629 PREDICTED: Fumarate hydratase class I, aerobic nan K01676
gene-evm.TU.Chr10.685 rna-evm.model.Chr10.685 Chr10 21205941 21249517 PREDICTED: Coiled-coil domain-containing protein 50 nan K25949

For more detailed data, you can explore the Download section to access the full dataset.