CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.610 rna-evm.model.Chr10.610 Chr10 18939794 18940362 PREDICTED: complement component 4 nan nan
gene-evm.TU.Chr10.611 rna-evm.model.Chr10.611 Chr10 18947937 18956763 PREDICTED: complement component 4 nan nan
gene-evm.TU.Chr10.612 rna-evm.model.Chr10.612 Chr10 18963221 19000533 PREDICTED: TMV resistance protein N-like nan K04152
gene-evm.TU.Chr10.613 rna-evm.model.Chr10.613 Chr10 19000729 19026562 uncharacterized protein nan K26200
gene-evm.TU.Chr10.614 rna-evm.model.Chr10.614 Chr10 19028637 19041008 PREDICTED: Serine/threonine-protein kinase PINK1, mitochondrial GO:0004672;GO:0005524;GO:0006468 K05688
gene-evm.TU.Chr10.615 rna-evm.model.Chr10.615 Chr10 19042568 19047951 uncharacterized protein GO:0003676;GO:0008270 K09250
gene-evm.TU.Chr10.617 rna-evm.model.Chr10.617 Chr10 19084025 19093301 uncharacterized protein nan K08631
gene-evm.TU.Chr10.618 rna-evm.model.Chr10.618 Chr10 19093404 19132232 PREDICTED: a disintegrin and metalloproteinase with thrombospondin motifs 18 [EC:3.4.24.-] nan K08628
gene-evm.TU.Chr10.619 rna-evm.model.Chr10.619 Chr10 19137073 19138797 PREDICTED: mucin-2 nan K08630
gene-evm.TU.Chr10.62 rna-evm.model.Chr10.62 Chr10 2019356 2031683 PREDICTED: Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 nan K13646

For more detailed data, you can explore the Download section to access the full dataset.