CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.597 rna-evm.model.Chr10.597 Chr10 18491405 18492574 PREDICTED: Beta-1,3-galactosyltransferase 1 GO:0006486;GO:0008378;GO:0016020 K07819
gene-evm.TU.Chr10.598 rna-evm.model.Chr10.598 Chr10 18499052 18500206 PREDICTED: Beta-1,3-galactosyltransferase 1 GO:0006486;GO:0008378;GO:0016020 K07819
gene-evm.TU.Chr10.599 rna-evm.model.Chr10.599 Chr10 18508927 18526501 PREDICTED: ATPase family AAA domain-containing protein 3-A GO:0005524;GO:0005739;GO:0007005 K17681
gene-evm.TU.Chr10.6 rna-evm.model.Chr10.6 Chr10 189844 194163 PREDICTED: phage-related exonuclease GO:0008270 nan
gene-evm.TU.Chr10.60 rna-evm.model.Chr10.60 Chr10 1964593 1987254 uncharacterized protein nan K18719
gene-evm.TU.Chr10.600 rna-evm.model.Chr10.600 Chr10 18528656 18534427 PREDICTED: Tetratricopeptide repeat protein 17 GO:0005515 K24931
gene-evm.TU.Chr10.601 rna-evm.model.Chr10.601 Chr10 18538015 18577486 PREDICTED: E3 ubiquitin-protein ligase MIB2 GO:0004842;GO:0005515;GO:0008270;GO:0016567;GO:0046872 K10645
gene-evm.TU.Chr10.603_evm.TU.Chr10.605_evm.TU.Chr10.606 rna-evm.model.Chr10.603_evm.model.Chr10.605_evm.model.Chr10.606 Chr10 18705391 18778547 PREDICTED: Transmembrane protein 26 nan K04218
gene-evm.TU.Chr10.604 rna-evm.model.Chr10.604 Chr10 18737402 18738192 PREDICTED: exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] nan K16599
gene-evm.TU.Chr10.607 rna-evm.model.Chr10.607 Chr10 18848150 18849244 uncharacterized protein nan K20705

For more detailed data, you can explore the Download section to access the full dataset.