CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.584 rna-evm.model.Chr10.584 Chr10 18044733 18050963 PREDICTED: Acetylcholine receptor subunit delta GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04808
gene-evm.TU.Chr10.586 rna-evm.model.Chr10.586 Chr10 18149892 18167454 PREDICTED: Beta,beta-carotene 9',10'-oxygenase GO:0016702;GO:0055114 K10252
gene-evm.TU.Chr10.587 rna-evm.model.Chr10.587 Chr10 18173803 18193407 PREDICTED: Cytochrome P450 4F22 GO:0005506;GO:0016705;GO:0020037;GO:0055114 K07426
gene-evm.TU.Chr10.588 rna-evm.model.Chr10.588 Chr10 18197307 18198077 uncharacterized protein nan K19613
gene-evm.TU.Chr10.589 rna-evm.model.Chr10.589 Chr10 18198100 18202046 PREDICTED: NACHT, LRR and PYD domains-containing protein 3 nan K22615
gene-evm.TU.Chr10.59 rna-evm.model.Chr10.59 Chr10 1855331 1871706 PREDICTED: E3 ubiquitin-protein ligase DZIP3 nan K10642
gene-evm.TU.Chr10.590 rna-evm.model.Chr10.590 Chr10 18277576 18292905 PREDICTED: 39S ribosomal protein L51, mitochondrial GO:0003735 K17432
gene-evm.TU.Chr10.591 rna-evm.model.Chr10.591 Chr10 18303432 18305270 uncharacterized protein nan nan
gene-evm.TU.Chr10.593 rna-evm.model.Chr10.593 Chr10 18400902 18406977 PREDICTED: Senecionine N-oxygenase GO:0004499;GO:0050660;GO:0050661;GO:0055114 K18277
gene-evm.TU.Chr10.596 rna-evm.model.Chr10.596 Chr10 18468492 18482665 PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 9 GO:0004222;GO:0006508 K08621

For more detailed data, you can explore the Download section to access the full dataset.