CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.57 rna-evm.model.Chr10.57 Chr10 1732998 1743533 PREDICTED: Calcium-responsive transcription factor nan K21595
gene-evm.TU.Chr10.570 rna-evm.model.Chr10.570 Chr10 17382932 17383243 PREDICTED: Putative AC9 transposase GO:0046983 K24637
gene-evm.TU.Chr10.571 rna-evm.model.Chr10.571 Chr10 17383256 17384149 PREDICTED: Zinc finger BED domain-containing protein 4 nan K24637
gene-evm.TU.Chr10.572 rna-evm.model.Chr10.572 Chr10 17393823 17394900 PREDICTED: FMRFamide receptor GO:0004930;GO:0007186;GO:0016020 K05053
gene-evm.TU.Chr10.574 rna-evm.model.Chr10.574 Chr10 17417601 17417918 PREDICTED: Integrase/recombinase xerD-like nan nan
gene-evm.TU.Chr10.576 rna-evm.model.Chr10.576 Chr10 17532683 17533828 PREDICTED: C3a anaphylatoxin chemotactic receptor GO:0004930;GO:0007186;GO:0016020 K05053
gene-evm.TU.Chr10.578 rna-evm.model.Chr10.578 Chr10 17642786 17643239 uncharacterized protein GO:0016020 K05053
gene-evm.TU.Chr10.579 rna-evm.model.Chr10.579 Chr10 17767301 17835002 PREDICTED: Ephrin type-A receptor 4 GO:0005515 K05105
gene-evm.TU.Chr10.58 rna-evm.model.Chr10.58 Chr10 1796674 1798920 PREDICTED: Transposon TX1 uncharacterized 149 kDa protein nan K26653
gene-evm.TU.Chr10.583 rna-evm.model.Chr10.583 Chr10 18027798 18032815 PREDICTED: Acetylcholine receptor subunit delta GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04808

For more detailed data, you can explore the Download section to access the full dataset.