CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.550 rna-evm.model.Chr10.550 Chr10 16431714 16449575 PREDICTED: [F-actin]-monooxygenase MICAL3 GO:0006887;GO:0016709;GO:0031267 K19947
gene-evm.TU.Chr10.551 rna-evm.model.Chr10.551 Chr10 16464803 16545894 PREDICTED: Probable receptor-like serine/threonine-protein kinase At4g34500 GO:0004672;GO:0005524;GO:0006468 K04730
gene-evm.TU.Chr10.552 rna-evm.model.Chr10.552 Chr10 16576285 16584672 uncharacterized protein nan nan
gene-evm.TU.Chr10.553 rna-evm.model.Chr10.553 Chr10 16586618 16605070 uncharacterized protein nan nan
gene-evm.TU.Chr10.554 rna-evm.model.Chr10.554 Chr10 16628803 16667144 PREDICTED: Kinesin-like protein KIF20A GO:0003777;GO:0005524;GO:0007018;GO:0008017 K10402
gene-evm.TU.Chr10.555 rna-evm.model.Chr10.555 Chr10 16670746 16671108 PREDICTED: Fer3-like protein GO:0046983 K22400
gene-evm.TU.Chr10.556 rna-evm.model.Chr10.556 Chr10 16677598 16739834 PREDICTED: Basement membrane-specific heparan sulfate proteoglycan core protein GO:0005515 K06255
gene-evm.TU.Chr10.557 rna-evm.model.Chr10.557.3 Chr10 16761038 16849682 PREDICTED: Basement membrane-specific heparan sulfate proteoglycan core protein GO:0005509;GO:0005515 K06255
gene-evm.TU.Chr10.558 rna-evm.model.Chr10.558 Chr10 16935303 16936652 PREDICTED: C-type lectin nan K25727
gene-evm.TU.Chr10.56 rna-evm.model.Chr10.56.1 Chr10 1718100 1727547 uncharacterized protein nan K10740

For more detailed data, you can explore the Download section to access the full dataset.