CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.560 rna-evm.model.Chr10.560 Chr10 16975122 16992240 PREDICTED: Signal recognition particle receptor subunit beta nan K12272
gene-evm.TU.Chr10.561 rna-evm.model.Chr10.561 Chr10 16997195 17004312 PREDICTED: Nephrin GO:0005515 K24496
gene-evm.TU.Chr10.562 rna-evm.model.Chr10.562 Chr10 17026540 17031789 PREDICTED: Beta,beta-carotene 9',10'-oxygenase GO:0016702;GO:0055114 K10252
gene-evm.TU.Chr10.563 rna-evm.model.Chr10.563 Chr10 17031790 17035521 PREDICTED: Beta,beta-carotene 9',10'-oxygenase GO:0016702;GO:0055114 K10252
gene-evm.TU.Chr10.564 rna-evm.model.Chr10.564 Chr10 17038687 17055898 PREDICTED: Beta,beta-carotene 9',10'-oxygenase GO:0016702;GO:0055114 K10252
gene-evm.TU.Chr10.565 rna-evm.model.Chr10.565 Chr10 17059857 17094112 PREDICTED: Exocyst complex component 8 GO:0000145;GO:0006887 K19986
gene-evm.TU.Chr10.566 rna-evm.model.Chr10.566 Chr10 17200673 17200894 uncharacterized protein nan nan
gene-evm.TU.Chr10.567 rna-evm.model.Chr10.567 Chr10 17252181 17253143 uncharacterized protein nan nan
gene-evm.TU.Chr10.568 rna-evm.model.Chr10.568 Chr10 17253409 17253712 uncharacterized protein nan nan
gene-evm.TU.Chr10.569 rna-evm.model.Chr10.569 Chr10 17328284 17336243 PREDICTED: adhesion G protein-coupled receptor L2 nan nan

For more detailed data, you can explore the Download section to access the full dataset.