CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.54 rna-evm.model.Chr10.54 Chr10 1677560 1681486 PREDICTED: Adenine phosphoribosyltransferase GO:0009116 K00759
gene-evm.TU.Chr10.540 rna-evm.model.Chr10.540 Chr10 16025926 16028004 PREDICTED: PiggyBac transposable element-derived protein 4 nan K18464
gene-evm.TU.Chr10.541 rna-evm.model.Chr10.541.1 Chr10 16053063 16104477 PREDICTED: Zinc finger protein rotund GO:0003676 K23480
gene-evm.TU.Chr10.542 rna-evm.model.Chr10.542 Chr10 16120718 16127429 uncharacterized protein nan K20799
gene-evm.TU.Chr10.543 rna-evm.model.Chr10.543 Chr10 16172916 16174034 uncharacterized protein nan K25334
gene-evm.TU.Chr10.546 rna-evm.model.Chr10.546 Chr10 16271925 16277552 PREDICTED: Zinc finger MYM-type protein 1 GO:0046983 K24674
gene-evm.TU.Chr10.547 rna-evm.model.Chr10.547 Chr10 16322239 16346909 PREDICTED: conserved Plasmodium protein, unknown function nan K17528
gene-evm.TU.Chr10.548 rna-evm.model.Chr10.548 Chr10 16358151 16374888 PREDICTED: Vacuolar protein 8 GO:0005515 K08332
gene-evm.TU.Chr10.549 rna-evm.model.Chr10.549 Chr10 16378759 16399893 PREDICTED: 26S proteasome regulatory subunit 7 GO:0005524;GO:0036402 K03061
gene-evm.TU.Chr10.55 rna-evm.model.Chr10.55 Chr10 1687312 1695475 PREDICTED: golgin subfamily B member 1-like nan K16322

For more detailed data, you can explore the Download section to access the full dataset.