CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.523 rna-evm.model.Chr10.523 Chr10 15731349 15733851 PREDICTED: Putative acyl-CoA synthetase YngI GO:0003824 K23617
gene-evm.TU.Chr10.524 rna-evm.model.Chr10.524 Chr10 15734946 15737420 PREDICTED: Putative acyl-CoA synthetase YngI GO:0003824 K00666
gene-evm.TU.Chr10.525 rna-evm.model.Chr10.525 Chr10 15741094 15761548 PREDICTED: cAMP-dependent protein kinase regulatory subunit nan K10914
gene-evm.TU.Chr10.527 rna-evm.model.Chr10.527 Chr10 15904737 15910403 PREDICTED: p24 family protein gamma-2 nan K00949
gene-evm.TU.Chr10.528 rna-evm.model.Chr10.528 Chr10 15919991 15930870 PREDICTED: Hemagglutinin/amebocyte aggregation factor nan K25512
gene-evm.TU.Chr10.529 rna-evm.model.Chr10.529 Chr10 15933221 15940360 PREDICTED: Zinc finger HIT domain-containing protein 2 nan K23309
gene-evm.TU.Chr10.53 rna-evm.model.Chr10.53 Chr10 1670431 1676482 PREDICTED: Ribonuclease P protein subunit p29 GO:0003723;GO:0004540;GO:0006396;GO:0030677 K03538
gene-evm.TU.Chr10.532 rna-evm.model.Chr10.532 Chr10 15967470 15969800 PREDICTED: kelch-like protein 2/3 GO:0000166;GO:0003677;GO:0003887;GO:0006260 K26723
gene-evm.TU.Chr10.535 rna-evm.model.Chr10.535 Chr10 15992237 15996678 PREDICTED: solute carrier family 8 (sodium/calcium exchanger) nan K02678
gene-evm.TU.Chr10.538 rna-evm.model.Chr10.538 Chr10 16015600 16015923 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.