CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.513 rna-evm.model.Chr10.513 Chr10 15548208 15565449 PREDICTED: Protein RCC2 nan K10594
gene-evm.TU.Chr10.514 rna-evm.model.Chr10.514 Chr10 15576125 15578887 PREDICTED: Receptor tyrosine-protein kinase let-23 nan K04361
gene-evm.TU.Chr10.515 rna-evm.model.Chr10.515.4 Chr10 15591026 15627363 PREDICTED: Zinc finger matrin-type protein 1 GO:0003676;GO:0008270 K10137
gene-evm.TU.Chr10.516 rna-evm.model.Chr10.516 Chr10 15627703 15657161 PREDICTED: Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform GO:0046854;GO:0048015 K00922
gene-evm.TU.Chr10.517 rna-evm.model.Chr10.517 Chr10 15661551 15663427 PREDICTED: Complement C1q tumor necrosis factor-related protein 3 nan K24236
gene-evm.TU.Chr10.518 rna-evm.model.Chr10.518 Chr10 15664882 15666110 PREDICTED: Caprin-2 nan K24236
gene-evm.TU.Chr10.519 rna-evm.model.Chr10.519 Chr10 15667698 15682043 PREDICTED: Leucine-rich repeat-containing protein 34 GO:0005515 K10165
gene-evm.TU.Chr10.52 rna-evm.model.Chr10.52 Chr10 1665764 1667331 PREDICTED: Protein preY, mitochondrial nan K09791
gene-evm.TU.Chr10.520 rna-evm.model.Chr10.520 Chr10 15688003 15693759 PREDICTED: Acetylcholinesterase nan K01050
gene-evm.TU.Chr10.522 rna-evm.model.Chr10.522 Chr10 15700803 15726617 PREDICTED: Hermansky-Pudlak syndrome 3 protein nan K20190

For more detailed data, you can explore the Download section to access the full dataset.