CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1335 rna-evm.model.Chr1.1335 Chr1 42049970 42063368 PREDICTED: Basement membrane-specific heparan sulfate proteoglycan core protein GO:0005515 K24498
gene-evm.TU.Chr1.1336 rna-evm.model.Chr1.1336 Chr1 42089607 42136701 uncharacterized protein nan nan
gene-evm.TU.Chr1.1337 rna-evm.model.Chr1.1337 Chr1 42152945 42180834 PREDICTED: G-protein coupled receptor GRL101 nan nan
gene-evm.TU.Chr1.1338 rna-evm.model.Chr1.1338 Chr1 42201434 42293414 PREDICTED: G-protein coupled receptor GRL101 GO:0004930;GO:0005515;GO:0007186;GO:0016020 K04307
gene-evm.TU.Chr1.1339 rna-evm.model.Chr1.1339 Chr1 42333049 42335742 PREDICTED: SRC kinase signaling inhibitor 1 GO:0008270 K07492
gene-evm.TU.Chr1.134 rna-evm.model.Chr1.134 Chr1 4385938 4386408 PREDICTED: Plasminogen nan K01315
gene-evm.TU.Chr1.1341 rna-evm.model.Chr1.1341 Chr1 42427635 42474118 uncharacterized protein nan K17253
gene-evm.TU.Chr1.1342 rna-evm.model.Chr1.1342 Chr1 42505684 42506322 uncharacterized protein nan K10374
gene-evm.TU.Chr1.1345 rna-evm.model.Chr1.1345 Chr1 42609203 42610090 PREDICTED: Heat shock 70 kDa protein 12A nan K04043
gene-evm.TU.Chr1.1346 rna-evm.model.Chr1.1346 Chr1 42618974 42626970 PREDICTED: NLR family CARD domain-containing protein 4 nan K22266

For more detailed data, you can explore the Download section to access the full dataset.