CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.50 rna-evm.model.Chr10.50 Chr10 1650945 1663713 PREDICTED: Phenylalanine--tRNA ligase, mitochondrial GO:0000049;GO:0000166;GO:0004812;GO:0004826;GO:0005524;GO:0005737;GO:0006432;GO:0043039 K01889
gene-evm.TU.Chr10.500 rna-evm.model.Chr10.500 Chr10 15382526 15382738 uncharacterized protein nan nan
gene-evm.TU.Chr10.501 rna-evm.model.Chr10.501 Chr10 15382866 15383162 uncharacterized protein nan nan
gene-evm.TU.Chr10.503 rna-evm.model.Chr10.503 Chr10 15397277 15408335 PREDICTED: Ankyrin repeat domain-containing protein 50 GO:0005515 K21440
gene-evm.TU.Chr10.504 rna-evm.model.Chr10.504 Chr10 15441142 15443527 PREDICTED: Protein TANC2 nan K21440
gene-evm.TU.Chr10.507 rna-evm.model.Chr10.507 Chr10 15480175 15490168 PREDICTED: Protein DDI1 homolog 2 GO:0004190;GO:0005515;GO:0006508 K11885
gene-evm.TU.Chr10.508 rna-evm.model.Chr10.508 Chr10 15493139 15494103 uncharacterized protein nan K11885
gene-evm.TU.Chr10.509 rna-evm.model.Chr10.509 Chr10 15498486 15505840 PREDICTED: MICOS complex subunit Mic10 GO:0005743;GO:0061617 K17784
gene-evm.TU.Chr10.510 rna-evm.model.Chr10.510 Chr10 15511263 15520425 PREDICTED: Methylenetetrahydrofolate reductase GO:0004489;GO:0006555;GO:0055114 K25004
gene-evm.TU.Chr10.511_evm.TU.Chr10.512 rna-evm.model.Chr10.511_evm.model.Chr10.512 Chr10 15526090 15545984 PREDICTED: Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase GO:0008168 K14835

For more detailed data, you can explore the Download section to access the full dataset.