CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.49 rna-evm.model.Chr10.49 Chr10 1644800 1650757 PREDICTED: LYR motif-containing protein 4 nan K22069
gene-evm.TU.Chr10.490 rna-evm.model.Chr10.490 Chr10 15182739 15211787 PREDICTED: Pleckstrin homology domain-containing family M member 2 nan K15348
gene-evm.TU.Chr10.491 rna-evm.model.Chr10.491.2 Chr10 15216077 15229778 PREDICTED: Elongation factor 1-delta GO:0003746;GO:0006414 K15410
gene-evm.TU.Chr10.493 rna-evm.model.Chr10.493 Chr10 15273786 15278017 PREDICTED: tripartite motif-containing protein 2/3 nan K12026
gene-evm.TU.Chr10.494 rna-evm.model.Chr10.494 Chr10 15284269 15295101 PREDICTED: Transcription initiation factor TFIID subunit 10 GO:0005634;GO:0006352 K03134
gene-evm.TU.Chr10.495 rna-evm.model.Chr10.495 Chr10 15301601 15302356 PREDICTED: Chloride intracellular channel protein 2 GO:0005515 K05022
gene-evm.TU.Chr10.496 rna-evm.model.Chr10.496 Chr10 15328391 15328988 uncharacterized protein nan nan
gene-evm.TU.Chr10.497 rna-evm.model.Chr10.497 Chr10 15333810 15344263 PREDICTED: Cyclin-L1 GO:0000079;GO:0005634;GO:0006355;GO:0006396 K23966
gene-evm.TU.Chr10.498 rna-evm.model.Chr10.498 Chr10 15352121 15371661 PREDICTED: Ankyrin repeat domain-containing protein 50 nan K21440
gene-evm.TU.Chr10.499 rna-evm.model.Chr10.499 Chr10 15371695 15373595 PREDICTED: Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B GO:0005515 K04984

For more detailed data, you can explore the Download section to access the full dataset.