CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.470 rna-evm.model.Chr10.470 Chr10 14798788 14800650 PREDICTED: E3 ubiquitin-protein ligase TRIM56 GO:0008270;GO:0046872 K12035
gene-evm.TU.Chr10.474 rna-evm.model.Chr10.474 Chr10 14819515 14823933 PREDICTED: Complement C1q-like protein 4 nan K24237
gene-evm.TU.Chr10.475 rna-evm.model.Chr10.475 Chr10 14848162 14862572 uncharacterized protein nan nan
gene-evm.TU.Chr10.477 rna-evm.model.Chr10.477 Chr10 14968283 14975618 PREDICTED: Complement C1q-like protein 3 nan K23284
gene-evm.TU.Chr10.478 rna-evm.model.Chr10.478 Chr10 14977418 14986135 PREDICTED: Complement C1q-like protein 2 nan K24237
gene-evm.TU.Chr10.479 rna-evm.model.Chr10.479 Chr10 15008133 15019007 PREDICTED: Beta-1,3-galactosyltransferase 1 GO:0006486;GO:0008378;GO:0016020 K07819
gene-evm.TU.Chr10.480 rna-evm.model.Chr10.480 Chr10 15030154 15030504 PREDICTED: myotubularin-related protein 10/11/12 GO:0003676;GO:0004523 nan
gene-evm.TU.Chr10.481 rna-evm.model.Chr10.481 Chr10 15032677 15033894 PREDICTED: ESCRT-I complex subunit TSG101 nan K10804
gene-evm.TU.Chr10.483 rna-evm.model.Chr10.483 Chr10 15076937 15082259 PREDICTED: Complement C1q tumor necrosis factor-related protein 3 nan K23284
gene-evm.TU.Chr10.489 rna-evm.model.Chr10.489 Chr10 15144075 15170388 PREDICTED: Mitochondrial carrier protein Rim2 GO:0022857;GO:0055085 K15116

For more detailed data, you can explore the Download section to access the full dataset.