CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.458 rna-evm.model.Chr10.458 Chr10 14595503 14596888 PREDICTED: squid nan K03944
gene-evm.TU.Chr10.459 rna-evm.model.Chr10.459 Chr10 14597132 14598126 PREDICTED: Transposable element Tcb2 transposase nan K07494
gene-evm.TU.Chr10.46 rna-evm.model.Chr10.46 Chr10 1561567 1562237 PREDICTED: Transposable element Tcb2 transposase GO:0003677;GO:0006313;GO:0015074 K07499
gene-evm.TU.Chr10.460 rna-evm.model.Chr10.460 Chr10 14600019 14600675 PREDICTED: N-glycosidase R617 nan K09935
gene-evm.TU.Chr10.461 rna-evm.model.Chr10.461 Chr10 14627369 14644249 PREDICTED: Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit GO:0005789;GO:0018279 K12670
gene-evm.TU.Chr10.462_evm.TU.Chr10.463 rna-evm.model.Chr10.462_evm.model.Chr10.463 Chr10 14645622 14673711 PREDICTED: Sialin GO:0016020;GO:0055085 K12301
gene-evm.TU.Chr10.464 rna-evm.model.Chr10.464 Chr10 14683534 14709858 PREDICTED: Synaptobrevin GO:0016020;GO:0016192 K13504
gene-evm.TU.Chr10.466 rna-evm.model.Chr10.466 Chr10 14752486 14754764 PREDICTED: Transcription factor HES-4-A GO:0003677;GO:0006355;GO:0046983 K06054
gene-evm.TU.Chr10.467 rna-evm.model.Chr10.467 Chr10 14770650 14770804 uncharacterized protein nan K08116
gene-evm.TU.Chr10.468 rna-evm.model.Chr10.468 Chr10 14783177 14785083 PREDICTED: Transcription factor HES-1 GO:0003677;GO:0006355;GO:0046983 K06054

For more detailed data, you can explore the Download section to access the full dataset.