CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.439 rna-evm.model.Chr10.439 Chr10 14328487 14335628 uncharacterized protein nan nan
gene-evm.TU.Chr10.440 rna-evm.model.Chr10.440 Chr10 14342201 14343778 PREDICTED: Proteasome assembly chaperone 4 GO:0043248 K11878
gene-evm.TU.Chr10.441 rna-evm.model.Chr10.441 Chr10 14345603 14349809 uncharacterized protein nan K27000
gene-evm.TU.Chr10.442 rna-evm.model.Chr10.442 Chr10 14353861 14356247 uncharacterized protein nan K09265
gene-evm.TU.Chr10.444 rna-evm.model.Chr10.444 Chr10 14399093 14406083 PREDICTED: Toll-like receptor 6 GO:0005515;GO:0007165 K18809
gene-evm.TU.Chr10.445 rna-evm.model.Chr10.445 Chr10 14411727 14433173 PREDICTED: PCNA-associated factor GO:0006974;GO:0051726 K07344
gene-evm.TU.Chr10.447 rna-evm.model.Chr10.447 Chr10 14459572 14488438 PREDICTED: Neuralized-like protein 4 nan K16777
gene-evm.TU.Chr10.449 rna-evm.model.Chr10.449 Chr10 14526536 14527799 PREDICTED: Putative deoxyribonuclease TATDN2 GO:0016788 K03424
gene-evm.TU.Chr10.45 rna-evm.model.Chr10.45 Chr10 1561092 1561394 PREDICTED: Transposable element Tc1 transposase nan K07494
gene-evm.TU.Chr10.455 rna-evm.model.Chr10.455 Chr10 14567974 14573906 PREDICTED: squid nan nan

For more detailed data, you can explore the Download section to access the full dataset.